Postgenomic Medicine: Alternative to Biomarkers
- Authors: Lisitsa A.V.1, Ponomarenko E.A.1, Lokhov P.G.1, Archakov A.I.1
- Affiliations:
- Orekhovich Institute of Biomedical Chemistry, Moscow
- Issue: Vol 71, No 3 (2016)
- Section: STATE OF MEDICAL SCIENCES
- URL: https://vestnikramn.spr-journal.ru/jour/article/view/255-260
- DOI: https://doi.org/10.15690/vramn647
- Cite item
Abstract
About the authors
A. V. Lisitsa
Orekhovich Institute of Biomedical Chemistry,Moscow
Author for correspondence.
Email: lisitsa063@gmail.com
Russian Federation
Доктор биологических наук, член-корреспондент РАН, директор
Адрес: 119121, Москва, ул. Погодинская, д. 10
E. A. Ponomarenko
Orekhovich Institute of Biomedical Chemistry,Moscow
Email: 2463731@gmail.com
Russian Federation
Кандидат биологических наук, заведующая лабораторией анализа постгеномных данных
Адрес: 119121, Москва, ул. Погодинская, д. 10
P. G. Lokhov
Orekhovich Institute of Biomedical Chemistry,Moscow
Email: lokhovpg@gmail.com
Russian Federation
Доктор биологических наук, заведующий лабораторией масс-спектрометрической метаболомной диагностики
Адрес: 119121, Москва, ул. Погодинская, д. 10, стр. 8
A. I. Archakov
Orekhovich Institute of Biomedical Chemistry,Moscow
Email: archak@ibmc.msk.ru
Russian Federation
Доктор биологических наук, академик РАН, профессор, научный руководитель
Адрес: 119121, Москва, ул. Погодинская, д. 10, стр. 8
References
- Орехович В.Н. Современные представления о белках и их значение в биологии и медицине. — М.: Знание; 1952. — 22 c. [Orekhovich VN. Sovremennye predstavleniya o belkakh i ikh znachenie v biologii i meditsine. Moscow: Znanie; 1952. 22 p. (In Russ).]
- Anderson NL. The clinical plasma proteome: a survey of clinical assays for proteins in plasma and serum. Clin Chem. 2010;56(2):177–185. doi: 10.1373/clinchem.2009.126706.
- Gutman S, Kessler LG. The US Food and Drug Administration perspective on cancer biomarker development. Nat Rev Cancer. 2006;6(7):565–571. doi: 10.1038/nrc1911.
- Veenstra TD. Where are all the biomarkers? Expert Rev Proteomics. 2011;8(6):681–683. doi: 10.1586/epr.11.60.
- Archakov A, Zgoda V, Kopylov A, et al. Chromosome-centric approach to overcoming bottlenecks in the Human Proteome Project. Expert Rev Proteomics. 2012;9(6):667–676. doi: 10.1586/epr.12.54.
- Archakov AI, Ivanov YD, Lisitsa AV, Zgoda VG. AFM fishing nanotechnology is the way to reverse the Avogadro number in proteomics. Proteomics. 2007;7(1):4–9. doi: 10.1002/pmic.200600467.
- Lisitsa A, Moshkovskii S, Chernobrovkin A, et al. Profiling proteoforms: promising follow-up of proteomics for biomarker discovery. Expert Rev Proteomics. 2014;11(1):121–129. doi: 10.1586/14789450.2014.878652.
- Trifonova O, Lokhov P, Archakov A. Postgenomics diagnostics: metabolomics approaches to human blood profiling. OMICS. 2013;17(11):550–559. doi: 10.1089/omi.2012.0121.
- Дедов И.И., Тюльпаков А.Н., Чехонин В.П., и др. Персонализированная медицина: современное состояние и перспективы // Вестник Российской академии медицинских наук. — 2012. — Т. 67. — №12. — С. 4–12. [Dedov II, Tyul’pakov AN, Chekhonin VP, et al. Personilized medicine: State-of-the-art and prospects. Annals of the Russian academy of medical sciences. 2012;67(12):4–12. (In Russ).] doi: 10.15690/vramn.v67i12.474.
- Lin PH, Kuo WH, Huang AC, et al. Multiple gene sequencing for risk assessment in patients with early-onset or familial breast cancer. Oncotarget. 2016;7(7):8310–8320. doi: 10.18632/oncotarget.7027.
- Lisitsa AV, Poverennaya EV, Ponomarenko EA, Archakov AI. The width of human plasma proteome compared with cancer cell line and bacteria. J Biomol Res Ther. 2015;4(4):1000132. doi: 10.4172/2167-7956.1000132.
- Archakov A, Ivanov Y, Lisitsa A, Zgoda V. Biospecific irreversible fishing coupled with atomic force microscopy for detection of extremely low-abundant proteins. Proteomics. 2009;9(5):1326–1343. doi: 10.1002/pmic.200800598.
- Liotta LA, Petricoin EF, 3rd. -Omics and cancer biomarkers: link to the biological truth or bear the consequences. Cancer Epidemiol Biomarkers Prev. 2012;21(8):1229–1235. doi: 10.1158/1055-9965.EPI-12-0635.
- Ponomarenko E, Baranova A, Lisitsa A, et al. The chromosome-centric human proteome project at FEBS Congress. Proteomics. 2014;14(2-3):147–152. doi: 10.1002/pmic.201300373.
- Venter JC, Smith HO, Adams MD. The sequence of the human genome. Clin Chem. 2015;61(9):1207–1208. doi: 10.1373/clinchem.2014.237016.
- Miroshnichenko YV, Prostova MA, Kvetinskaya AV, Lisitsa AV. Life sciences in Russia: Priorities in 2014–2020. Acta Naturae. 2015;7(3(26)):6–14.
- Bartlett JM, Stirling D. A short history of the polymerase chain reaction. In: Bartlett JM, Stirling D, editors. PCR Protocols. 2nd ed. Humana Press; 2003. p. 3–6. doi: 10.1385/1-59259-384-4:3.
- Мальсагова К.А., Иванов Ю.Д., Плешакова Т.О., и др. КНИ-нанопроволочный биосенсор для детекции белка d-nfat 1 // Биомедицинская химия. — 2015. — Т. 61. — № 4. — С. 462–467. [Malsagova KA, Ivanov YuD, Pleshakova TO, et al. SOI-nanowire biosensor for the detection of D-NFAT 1 protein. Biomed Khim. 2015;61(4):462−467. (In Russ).] doi: 10.18097/PBMC20156104462.
- Ivanov YD, Pleshakova T, Malsagova K, et al. Highly sensitive protein detection by combination of atomic force microscopy fishing with charge generation and mass spectrometry analysis. FEBS J. 2014;281(20):4705–4717. doi: 10.1111/febs.13011.
- Shugay M, Britanova OV, Merzlyak EM, et al. Towards error-free profiling of immune repertoires. Nat Methods. 2014;11(6):653–655. doi: 10.1038/nmeth.2960.
- Hori SS, Gambhir SS. Mathematical model identifies blood biomarker-based early cancer detection strategies and limitations. Sci Transl Med. 2011;3(109):109–116. doi: 10.1126/scitranslmed.3003110.
- Lokhov PG, Balashova EE, Voskresenskaya AA, et al. Mass spectrometric signatures of the blood plasma metabolome for disease diagnostics. Biomed Rep. 2016;4(1):122–126. doi: 10.3892/br.2015.548.
- Лохов П.Г., Маслов Д.Л., Трифонова О.П., и др. Масс-спектрометрический анализ низкомолекулярной фракции крови как способ унификации терапевтического лекарственного мониторинга // Биомедицинская химия. — 2015. — Т. 60. — № 2. — С. 201–216. [Lokhov PG, Maslov DL, Trifonova OP, et al. Mass spectrometry of blood low-molecular fraction as a method for unification of therapeutic drug monitoring. Biomed Khim. 2014;60(2):201–216. (In Russ).]
- Lokhov PG, Dashtiev MI, Moshkovskii SA, Archakov AI. Metabolite profiling of blood plasma of patients with prostate cancer. Metabolomics. 2010;6(1):156–163. doi: 10.1007/s11306-009-0187-x.
- Lokhov PG, Trifonova OP, Maslov DL, Archakov AI. Blood plasma metabolites and the risk of developing lung cancer in Russia. Eur J Cancer Prev. 2013;22(4):335–341. doi: 10.1097/CEJ.0b013e32835b3898.
- Lokhov PG, Trifonova OP, Maslov DL, et al. Diagnosing impaired glucose tolerance using direct infusion mass spectrometry of blood plasma. PLoS One. 2014;9(9):e105343. doi: 10.1371/journal.pone.0105343.
- Lokhov PG, Kharybin ON, Archakov AI. Diagnosis of lung cancer based on direct-infusion electrospray mass spectrometry of blood plasma metabolites. Int J Mass Spectrom. 2012;309:200–205. doi: 10.1016/j.ijms.2011.10.002.
- He MX. The synergy between bioinformatics and cognitive informatics. In: Buzatu C, editor. Modern computer applications in science and education: Proceedings of the 14th International Conference on Applied Computer Science (ACS ‘14); Cambridge, MA, USA. WSEAS Press; 2014. p. 258−262.
- Lisitsa AV, Stewart E, Kolker E. Is it time for cognitive bioinformatics? J Data Mining Genomics Proteomics. 2015;6:173. doi: 10.4172/2153-0602.1000173.
- Васильков А. Когнитивные технологии IBM: на пути к искусственному мозгу. Компьютерра [интернет]. 8.08.2013 [доступ от 14.03.2016]. Доступ по ссылке http://computerra.ru/78397/ibm-synapse-cognitive-computing. [Vasilkov A. Kognitivniye tekhnologii IBM: na puti k iskusstvennomu mozgu. Kompiyuterra [Internet]. 08.08.2013. Access date 14.03.2016. Available on: http://computerra.ru/78397/ibm-synapse-cognitive-computing (In Russ.)]
Supplementary files
There are no supplementary files to display.
Statistics
Views
Abstract - 1314
PDF (Russian) - 326
Cited-By

Comments on this article
by melanie martin (19.09.2017)
by melanie martin (04.11.2017)
by melanie martin (04.11.2017)
by Lee Min (10.05.2019)
by Lee Min (10.05.2019)
by Lee Min (24.06.2019)
by Mikiko Anhoco (25.06.2019)
by rabebitid rabebitid (03.07.2019)
by kyle walker (08.08.2019)
by rabebitid rabebitid (19.08.2019)
by Mikiko Anhoco (22.08.2019)
by kyle walker (09.09.2019)
by Ngo Che (27.09.2019)
by i l 123 (02.10.2019)
by bevafobe bevafobe (03.10.2019)
by kyle walker (08.10.2019)
by kyle walker (08.10.2019)
by jerry bill (14.10.2019)
by Lee Min (18.10.2019)
by smith sera (28.10.2019)
by kyle walker (06.11.2019)
by letosot593 letosot593 (15.11.2019)
by biponi1544 biponi1544 (20.11.2019)
by moitruong sach (27.11.2019)
by ahri cool777 (27.11.2019)
by kyle walker (02.12.2019)
by moitruong sach (09.12.2019)
by ahri cool777 (09.12.2019)
by petaha9833 petaha9833 (23.12.2019)
by kyle walker (27.12.2019)
by Miriam Salpeter (26.01.2020)
by kyle walker (04.02.2020)
by Michael Stokes (20.02.2020)
by caosangdecal 456 (22.02.2020)
by vlw 98334 (03.03.2020)
by vlw 98334 (03.03.2020)
by iuk06665 iuk06665 (12.03.2020)
by drhue drhue (18.03.2020)
by Kang Nguyen (24.03.2020)
by Erkan Aydogan (24.03.2020)
by Viet Tran (24.03.2020)
by slay dark (27.03.2020)
by helena244 helena244 (27.03.2020)
by Bos Casino Online Terbesar (30.03.2020)
by vui koh (31.03.2020)
by Agen Bola Online Terbesar (31.03.2020)
by Kra Tos (01.04.2020)
by rain dark (06.04.2020)
by Nhẫn Bát Nhã (08.04.2020)
by kyle walker (09.04.2020)
by ha na bi (11.04.2020)
by caosangdecal 789 (18.04.2020)
by Agen Judi Online Terpercaya (23.04.2020)
by Bandar Slot Online Terpercaya (23.04.2020)
by Viet Tran (30.04.2020)
by Viet Tran (08.05.2020)
by Bos Casino Online Terbesar (11.05.2020)
by Millie Mowry (21.05.2020)
by Sienna Moseley (25.05.2020)
by John Noels (26.05.2020)
by SNAF17P1 SNAF17P1 (01.06.2020)
by caosangdecal dantemxeuytin (09.06.2020)
by veu54764 veu54764 (02.07.2020)
by Blake Morris (24.07.2020)
by Ruth True (24.07.2020)
by Jug Head (24.07.2020)
by Nick D Nowlin (25.07.2020)
by john paker (30.07.2020)
by LTP1302D7A2VDF LTP1302D7A2VDF (03.08.2020)
by ahri cool777 (05.08.2020)
by BM697451 BM697451 (05.08.2020)
by moitruong sach (05.08.2020)
by manhattan glory (05.08.2020)
by Harri Paloheimo (11.08.2020)
by caosangdecaldantemxe caosangdecaldantemxe (12.08.2020)
by Erkan Aydogan (12.08.2020)
by moitruong sach (14.08.2020)
by Viet bds (26.08.2020)
by Mr cuthbert478 (17.09.2020)
by huynh do do (24.09.2020)
by Deni Cebaloss (01.10.2020)
by Andy Stack (06.10.2020)
by tony martial (10.10.2020)
by quatang duocyeuthich (11.10.2020)
by Mike Roy (12.10.2020)
by David Martin (12.10.2020)
by Sara Louis (13.10.2020)
by caosangdecal thietketemxe (14.10.2020)
by jazz 2204 (16.10.2020)
by Erkan Aydogan (17.10.2020)
by Mr Kenneth321 (20.10.2020)
by vanladave1 d (21.10.2020)
by xskt xs88tv (26.10.2020)
by Maia Sayi (28.10.2020)
by Suzi Stack (05.11.2020)
by john paker (05.11.2020)
by victor bradford (07.11.2020)
by cindy rempell (10.11.2020)
by Michell William (10.11.2020)
by xoso88 xskt (12.11.2020)
by quatang duocyeuthich (15.11.2020)
by Fred Smith (18.11.2020)
by malay sia mala (19.11.2020)
by Trisha Pitt (24.11.2020)
by Ms Brenna (24.11.2020)
by xs88 xskt (25.11.2020)
by republik poker (26.11.2020)
by Erkan Aydogan (02.12.2020)
by victor bradford (18.12.2020)
by xoso88 kqxoso (24.12.2020)
by dejaol sone (30.12.2020)
by Đồng hồ Minh Tường (12.01.2021)
by Đồng hồ Treo Tường (14.01.2021)
by xsmb xs88tv (18.01.2021)
by Đồng hồ Treo Tường (20.01.2021)
by Đồng hồ Treo Tường (24.01.2021)
by Linda Ween (25.01.2021)