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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" article-type="review-article" dtd-version="1.2" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">Annals of the Russian academy of medical sciences</journal-id><journal-title-group><journal-title xml:lang="en">Annals of the Russian academy of medical sciences</journal-title><trans-title-group xml:lang="ru"><trans-title>Вестник Российской академии медицинских наук</trans-title></trans-title-group></journal-title-group><issn publication-format="print">0869-6047</issn><issn publication-format="electronic">2414-3545</issn><publisher><publisher-name xml:lang="en">"Paediatrician" Publishers LLC</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">2291</article-id><article-id pub-id-type="doi">10.15690/vramn2291</article-id><article-categories><subj-group subj-group-type="toc-heading" xml:lang="en"><subject>INFECTIOUS DISEASES: CURRENT ISSUES</subject></subj-group><subj-group subj-group-type="toc-heading" xml:lang="ru"><subject>АКТУАЛЬНЫЕ ВОПРОСЫ ИНФЕКЦИОННЫХ БОЛЕЗНЕЙ</subject></subj-group><subj-group subj-group-type="article-type"><subject>Review Article</subject></subj-group></article-categories><title-group><article-title xml:lang="en">The History of the Global Spread of the Causative Agent of Anthrax Based on the Whole Genome Phylogenetic Analysis of <italic>Bacillus anthracis</italic></article-title><trans-title-group xml:lang="ru"><trans-title>История глобального распространения возбудителя сибирской язвы на основе полногеномного филогенетического анализа <italic>Bacillus anthracis</italic></trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-0135-7258</contrib-id><contrib-id contrib-id-type="spin">8535-6930</contrib-id><name-alternatives><name xml:lang="en"><surname>Onishchenko</surname><given-names>Gennadii G.</given-names></name><name xml:lang="ru"><surname>Онищенко</surname><given-names>Геннадий Григорьевич</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>MD, PhD, Professor, Academician of the RAS</p></bio><bio xml:lang="ru"><p>д.м.н., профессор, академик РАН</p></bio><email>onishchenko@raop.ru</email><xref ref-type="aff" rid="aff1"/><xref ref-type="aff" rid="aff2"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-9362-3949</contrib-id><contrib-id contrib-id-type="spin">5030-2635</contrib-id><name-alternatives><name xml:lang="en"><surname>Kulichenko</surname><given-names>Alexandr N.</given-names></name><name xml:lang="ru"><surname>Куличенко</surname><given-names>Александр Николаевич</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>MD, PhD, Professor, Academician of the RAS</p></bio><bio xml:lang="ru"><p>д.м.н., профессор, академик РАН</p></bio><email>kulichenko_an@list.ru</email><xref ref-type="aff" rid="aff3"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-1117-1185</contrib-id><contrib-id contrib-id-type="spin">3966-6884</contrib-id><name-alternatives><name xml:lang="en"><surname>Eremenko</surname><given-names>Evgenii I.</given-names></name><name xml:lang="ru"><surname>Еременко</surname><given-names>Евгений Иванович</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>MD, PhD, Professor</p></bio><bio xml:lang="ru"><p>д.м.н., профессор</p></bio><email>ejer@mail.ru</email><xref ref-type="aff" rid="aff3"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-6458-6790</contrib-id><contrib-id contrib-id-type="spin">7749-6935</contrib-id><name-alternatives><name xml:lang="en"><surname>Pisarenko</surname><given-names>Sergey V.</given-names></name><name xml:lang="ru"><surname>Писаренко</surname><given-names>Сергей Владимирович</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>PhD in Chemical Sciences</p></bio><bio xml:lang="ru"><p>к.х.н.</p></bio><email>pisarenko_sv@mail.ru</email><xref ref-type="aff" rid="aff3"/></contrib></contrib-group><aff-alternatives id="aff1"><aff><institution xml:lang="en">The Russian Academy of Education</institution></aff><aff><institution xml:lang="ru">Российская академия образования</institution></aff></aff-alternatives><aff-alternatives id="aff2"><aff><institution xml:lang="en">I.M. Sechenov First Moscow State Medical University (Sechenov University)</institution></aff><aff><institution xml:lang="ru">Первый Московский государственный медицинский университет имени И.М. Сеченова (Сеченовский Университет)</institution></aff></aff-alternatives><aff-alternatives id="aff3"><aff><institution xml:lang="en">Stavropol Plague Control Research Institute</institution></aff><aff><institution xml:lang="ru">Ставропольский научно-исследовательский противочумный институт</institution></aff></aff-alternatives><pub-date date-type="preprint" iso-8601-date="2022-12-25" publication-format="electronic"><day>25</day><month>12</month><year>2022</year></pub-date><pub-date date-type="pub" iso-8601-date="2023-02-04" publication-format="electronic"><day>04</day><month>02</month><year>2023</year></pub-date><volume>77</volume><issue>6</issue><issue-title xml:lang="en"/><issue-title xml:lang="ru"/><fpage>391</fpage><lpage>397</lpage><history><date date-type="received" iso-8601-date="2022-11-24"><day>24</day><month>11</month><year>2022</year></date><date date-type="accepted" iso-8601-date="2022-12-09"><day>09</day><month>12</month><year>2022</year></date></history><permissions><copyright-statement xml:lang="en">Copyright ©; 2023, "Paediatrician" Publishers LLC</copyright-statement><copyright-statement xml:lang="ru">Copyright ©; 2023, Издательство "Педиатръ"</copyright-statement><copyright-year>2023</copyright-year><copyright-holder xml:lang="en">"Paediatrician" Publishers LLC</copyright-holder><copyright-holder xml:lang="ru">Издательство "Педиатръ"</copyright-holder><ali:free_to_read xmlns:ali="http://www.niso.org/schemas/ali/1.0/" start_date="2024-02-04"/></permissions><self-uri xlink:href="https://vestnikramn.spr-journal.ru/jour/article/view/2291">https://vestnikramn.spr-journal.ru/jour/article/view/2291</self-uri><abstract xml:lang="en"><p>The review presents current data on the history of distribution, phylogeography, population structure, features of the evolution of the causative agent of anthrax. The results of foreign publications and our own original materials on the territorial distribution of genetic lines of Bacillus anthracis, the genetic relationship of variants isolated in Russia and abroad, the ways of distribution of variants of the pathogen in Russia and neighboring countries summarized. Based on the limited possibilities of spreading anthrax infection with sick animals and the high stability of pathogen spores in the environment, the leading role of human activity in the spread of B. anthracis shown. The probable ways of spread of the pathogen over long distances described, determined by the historical migration of people, the routes of conquerors, trade routes and the import of livestock products. The spread of the causative agent of anthrax on the territory of the Russian Federation began with Eastern Siberia and through the south of Siberia reached the European part of the Russian Federation, including the North Caucasus.</p></abstract><trans-abstract xml:lang="ru"><p>В обзоре представлены современные данные об истории распространения, филогеографии, популяционной структуре, особенностях эволюции возбудителя сибирской язвы. Обобщены результаты зарубежных публикаций и собственные оригинальные материалы о территориальном распределении генетических линий Bacillus anthracis, генетическом родстве вариантов, выделенных в России и за рубежом, путях распространения вариантов возбудителя на территории Российской Федерации и сопредельных стран. Исходя из ограниченных возможностей распространения сибиреязвенной инфекции с больными животными и высокой стабильности спор возбудителя в окружающей среде, показана ведущая роль деятельности человека в распространении B. anthracis. Описаны вероятные пути распространения патогена на дальние расстояния, определяемые исторической миграцией людей, маршрутами завоевателей, торговыми путями и ввозом продуктов животноводства. Распространение возбудителя сибирской язвы на территории России началось с Восточной Сибири и через юг Сибири достигло европейской части Российской Федерации, включая Северный Кавказ.</p></trans-abstract><kwd-group xml:lang="en"><kwd>anthrax</kwd><kwd>Bacillus anthracis</kwd><kwd>genetics</kwd><kwd>evolution</kwd><kwd>phylogeography</kwd></kwd-group><kwd-group xml:lang="ru"><kwd>сибирская язва</kwd><kwd>Bacillus anthracis</kwd><kwd>генетика</kwd><kwd>эволюция</kwd><kwd>филогеография</kwd></kwd-group><funding-group/></article-meta></front><body></body><back><ref-list><ref id="B1"><label>1.</label><mixed-citation>Carlson CJ, Getz WM, Kausrud KL, et al. Spores and soil from six sides: interdisciplinarity and the environmental biology of anthrax (Bacillus anthracis). Biol Rev Camb Philos Soc. 2018;93(4):1813–1831. doi: https://doi.org/10.1111/brv.12420</mixed-citation></ref><ref id="B2"><label>2.</label><mixed-citation>Pilo P, Frey J. Pathogenicity, population genetics and dissemination of Bacillus anthracis. Infec Genet Evol. 2018;64:115–125. doi: https://doi.org/10.1016/j.meegid.2018.06.024</mixed-citation></ref><ref id="B3"><label>3.</label><mixed-citation>Сибирская язва: актуальные проблемы разработки и внедрения медицинских средств защиты / под ред. Г.Г. Онищенко, В.В. Кожухова. — М.: Медицина, 2010. — 424 с. [Sibirskaya yazva: aktual’nye problemy razrabotki i vnedreniya medicinskih sredstv zashchity / pod red. GG Onishchenko, VV Kozhuhova. Moscow: Medicina; 2010. 424 s. (In Russ.)]</mixed-citation></ref><ref id="B4"><label>4.</label><mixed-citation>Сибирская язва: актуальные проблемы разработки и внедрения медицинских средств защиты / под ред. Г.Г. Онищенко, И.В. Дармова, С.В. Борисевича. — 2-е изд., испр. и доп. — СПб., 2018. — 592 с. [Sibirskaya yazva: aktual’nye problemy razrabotki i vnedreniya medicinskih sredstv zashchity / pod red. GG Onishchenko, IV Darmova, SV Borisevicha. 2-e izd., ispr. i dop. Sankt-Peterburg; 2018. 592 s. (In Russ.)]</mixed-citation></ref><ref id="B5"><label>5.</label><mixed-citation>Van Ert MN, Easterday WR, Huynh L, et al. Global Genetic Population Structure of Bacillus anthracis. PLoS One. 2007;2(5):e461. doi: https://doi.org/10.1371/journal.pone.0000461</mixed-citation></ref><ref id="B6"><label>6.</label><mixed-citation>Sahl JW, Pearson T, Okinaka R, et al. A Bacillus anthracis genome sequence from the Sverdlovsk 1979 autopsy specimens. mBio. 2016;7(5):e01501-16. doi: https://doi.org/10.1128/mBio.01501-16</mixed-citation></ref><ref id="B7"><label>7.</label><mixed-citation>Hang’Ombe MB, Mwansa JC, Muwowo S, et al. Human animal anthrax outbreak in the Luangwa valley of Zambia in 2011. Trop Doct. 2012;42(3):136–139. doi: https://doi.org/ 10.1258/td.2012.110454</mixed-citation></ref><ref id="B8"><label>8.</label><mixed-citation>Ohnishi N, Maruyama F, Ogawa H, et al. Genome sequence of a Bacillus anthracis outbreak strain from Zambia, 2011. Genome Announc. 2014;6;2(2):e00116-14. doi: https://doi.org/10.1128/genomeA.00116-14</mixed-citation></ref><ref id="B9"><label>9.</label><mixed-citation>Derzelle S, Aguilar-Bultet L, Frey J. Comparative genomics of Bacillus anthracis from the wool industry highlights polymorphisms of lineage A.Br.Vollum. Infect Genet Evol. 2016;46:50–58. doi: https://doi.org/10.1016/j.meegid.2016.10.019</mixed-citation></ref><ref id="B10"><label>10.</label><mixed-citation>Price EP, Seymour ML, Sarovich DS, et al. Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe. Emerg Infec Dis. 2012;18(8):1307–1313. doi: https://doi.org/10.3201/eid1808.111343</mixed-citation></ref><ref id="B11"><label>11.</label><mixed-citation>Aikembayev AM, Lukhnova L, Temiraliyeva G, et al. Historical distribution and molecular diversity of Bacillus anthracis, Kazakhstan. Emerg Infect Dis. 2010;16(5):789–796. doi: https://doi.org/10.3201/eid1605.091427</mixed-citation></ref><ref id="B12"><label>12.</label><mixed-citation>Derzelle S, Girault G, Roest HI, et al. Molecular diversity of Bacillus anthracis in the Netherlands: investigating the relationship to the worldwide population using whole-genome SNP discovery. Infect Genet Evol. 2015;32:370–376. doi: https://doi.org/10.1016/j.meegid.2015.03.030</mixed-citation></ref><ref id="B13"><label>13.</label><mixed-citation>Khmaladze E, Birdsell DN, Naumann AA, et al. Phylogeography of Bacillus anthracis in the country of Georgia shows evidence of population structuring and is dissimilar to other regional genotypes. PLoS One. 2014;9(7):e102651. doi: https://doi.org/10.1371/journal.pone.0102651</mixed-citation></ref><ref id="B14"><label>14.</label><mixed-citation>Pilo P, Perreten V, Frey J. Molecular epidemiology of Bacillus anthracis: determining the correct origin. Appl Environ Microbiol. 2008;74(9):2928–2931. doi: https://doi.org/10.1128/AEM.02574-07</mixed-citation></ref><ref id="B15"><label>15.</label><mixed-citation>Wattiau P, Klee SR, Fretin D, et al. Occurrence and genetic diversity of Bacillus anthracis strains isolated in an active wool-cleaning factory. App Environ Microbiol. 2008;74(13):4005–4011. doi: https://doi.org/10.1128/AEM.00417-08</mixed-citation></ref><ref id="B16"><label>16.</label><mixed-citation>Simonson TS, Okinaka RT, Wang B, et al. Bacillus anthracis in China and its relationship to worldwide lineages. BMC Microbiol. 2009;9:71. doi: https://doi.org/10.1186/1471-2180-9-71</mixed-citation></ref><ref id="B17"><label>17.</label><mixed-citation>Jung KH, Kim SH, Kim SK, et al. Genetic populations of Bacillus anthracis isolates from Korea. J Vet Sci. 2012;13(4):385–393 doi: https://doi.org/10.4142/jvs.2012.13.4.385</mixed-citation></ref><ref id="B18"><label>18.</label><mixed-citation>Girault G, Blouin Y, Vergnaud G, et al. High-throughput sequencing of Bacillus anthracis in France: investigating genome diversity and population structure using whole-genome SNP discovery. BMC Genomics. 2014;15:288. doi: https://doi.org/10.1186/1471-2164-15-288</mixed-citation></ref><ref id="B19"><label>19.</label><mixed-citation>Kenefic LJ, Pearson T, Okinaka RT, et al. Pre-Columbian origins for North American anthrax PLoS One. 2009;4(3):e4813. doi: https://doi.org/10.1371/journal.pone.0004813</mixed-citation></ref><ref id="B20"><label>20.</label><mixed-citation>Vergnaud G, Girault G, Thierry S, et al. Comparison of French and worldwide Bacillus anthracis strains favors a recent, post-Columbian origin of the predominant north-American clade. PLoS One. 2016;11(2):e0146216. doi: https://doi.org/10.1371/journal.pone.0146216</mixed-citation></ref><ref id="B21"><label>21.</label><mixed-citation>Van Ness GB. Ecology of anthrax. Science. 1971;172(3990):1303–1307. doi: https://doi.org/10.1126/science.172.3990.1303</mixed-citation></ref><ref id="B22"><label>22.</label><mixed-citation>Hanson RP. The earliest account of anthrax in man and animals in North America. J Am Vet Med Assoc. 1959;1;135:463–465.</mixed-citation></ref><ref id="B23"><label>23.</label><mixed-citation>Legge TM. The Milroy Lectures on industrial anthrax: Delivered before the Royal College of Physicians of London. Br Med J. 1905;1(2306):529–531. doi: https://doi.org/10.1136/bmj.1.2306.529</mixed-citation></ref><ref id="B24"><label>24.</label><mixed-citation>Doig AT, Gemmill JS. Epidemiology of a small outbreak of anthrax. Lancet. 1951;1(6662):1011–1012. doi: https://doi.org/10.1016/s0140-6736(51)92521-4</mixed-citation></ref><ref id="B25"><label>25.</label><mixed-citation>Jamieson WM, Green DM. Anthrax and bone-meal fertilizer. Lancet. 1955;268(6863):560. doi: https://doi.org/10.1016/s0140-6736(55)91238-1</mixed-citation></ref><ref id="B26"><label>26.</label><mixed-citation>Green DM, Jamieson WM. Anthrax and bone-meal fertilizer. Lancet. 1958;2(7038):153–154. doi: https://doi.org/10.1016/s0140-6736(58)92237-2</mixed-citation></ref><ref id="B27"><label>27.</label><mixed-citation>Geering WA. Anthrax in Australia. UN-WHO Inter-regional Anthrax Workshop. Kathmandu, Nepal; 1997.</mixed-citation></ref><ref id="B28"><label>28.</label><mixed-citation>Pisarenko SV, Eremenko EI, Ryazanova AG, et al. Phylogenetic analysis of Bacillus anthracis strains from Western Siberia reveals a new genetic cluster in the global population of the species. BMC Genomics. 2019;20(1):692. doi: https://doi.org/10.1186/s12864-019-6060-z</mixed-citation></ref><ref id="B29"><label>29.</label><mixed-citation>Pisarenko SV, Eremenko EI, Kovalev DA, et al. Molecular genotyping of 15 B. anthracis strains isolated in Eastern Siberia and Far East. Mol Phylogenet Evol. 2021;159:107116. doi: https://doi.org/10.1016/j.ympev.2021.107116</mixed-citation></ref><ref id="B30"><label>30.</label><mixed-citation>Eremenko E, Pechkovskii G, Pisarenko S, et al. Phylogenetics of Bacillus anthracis isolates from Russia and bordering countries. Infect Genet Evol. 2021;92:104890. doi: https://doi.org/10.1016/j.meegid.2021.104890</mixed-citation></ref><ref id="B31"><label>31.</label><mixed-citation>Куличенко А.Н., Еременко Е.И., Рязанова А.Г., и др. Биологические свойства и молекулярно-генетическая характеристика штаммов Bacillus anthracis, выделенных во время вспышки сибирской язвы в Ямало-Ненецком автономном округе в 2016 г. // Проблемы особо опасных инфекций. — 2017. — № 1. — С. 94–99. [Kulichenko AN, Eremenko EI, Ryazanova AG, et al. Biological Properties and Molecular-Genetic Characteristics of Bacillus anthracis Strains, Isolated during the Outbreak of Anthrax in the Yamalo-Nenets Autonomous District in 2016. Problemy Osobo Opasnykh Infektsii = Problems of Particularly Dangerous Infections. 2017;1:94–99. (In Russ.)] doi: https://doi.org/10.21055/0370-1069-2017-1-94-99</mixed-citation></ref><ref id="B32"><label>32.</label><mixed-citation>Timofeev V, Bahtejeva I, Mironova R, et al. Insights from Bacillus anthracis strains isolated from permafrost in the tundra zone of Russia. PLoS One. 2019;14(5):e0209140. doi: https://doi.org/10.1371/journal.pone.0209140</mixed-citation></ref><ref id="B33"><label>33.</label><mixed-citation>Pearson T, Okinaka RT, Foster JT, et al. Phylogenetic understanding of clonal populations in an era of whole genome sequencing. Infect Genet Evol. 2009;9(5):1010–1019. doi: https://doi.org/10.1016/j.meegid.2009.05.014</mixed-citation></ref><ref id="B34"><label>34.</label><mixed-citation>Keim P, Grunow R, Vipond R, et al. Whole Genome Analysis of Injectional Anthrax Identifies Two Disease Clusters Spanning More Than 13 Years. EBioMedicine. 2015;2(11):1613–1618. doi: https://doi.org/10.1016/j.ebiom.2015.10.004</mixed-citation></ref><ref id="B35"><label>35.</label><mixed-citation>Pullan ST, Pearson TR, Latham J, et al. Whole-genome sequencing investigation of animal-skin-drum-associated UK anthrax cases reveals evidence of mixed populations and relatedness to a US case. Microb Genom. 2015;1(5):e000039. doi: https://doi.org/10.1099/mgen.0.000039</mixed-citation></ref><ref id="B36"><label>36.</label><mixed-citation>Szablewski CM, Hendricks K, Bower WA, et al. Anthrax Cases Associated with Animal-Hair Shaving Brushes. Emerg Infect Dis. 2017;23(5):806–808. doi: https://doi.org/10.3201/eid2305.161554</mixed-citation></ref><ref id="B37"><label>37.</label><mixed-citation>Tatem AJ, Rogers DJ, Haу SI. Global transport networks and infectious disease spread. Adv Parasitol. 2006;62:293–343. doi: https://doi.org/10.1016/S0065-308X(05)62009-X</mixed-citation></ref><ref id="B38"><label>38.</label><mixed-citation>Wyres K, Conway T, Garg S, et al. WGS analysis and interpretation in clinical and public health microbiology laboratories: What are the requirements and how do existing tools compare? Pathogens. 2014;3(2):437–458. doi: https://doi.org/10.3390/pathogens3020437</mixed-citation></ref></ref-list></back></article>
